PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0250s0017.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 216aa    MW: 24080.8 Da    PI: 5.1824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0250s0017.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19655255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr++  +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  ++g
  Kalax.0250s0017.1.p  6 KYRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFQTAEEAARAYDQAAILMNG 55
                         8*****999.**********8.....334**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-33564IPR001471AP2/ERF domain
CDDcd000184.05E-34665No hitNo description
SuperFamilySSF541711.31E-20664IPR016177DNA-binding domain
PROSITE profilePS5103222.497663IPR001471AP2/ERF domain
PfamPF008474.5E-12655IPR001471AP2/ERF domain
SMARTSM003801.7E-38669IPR001471AP2/ERF domain
PRINTSPR003674.7E-11718IPR001471AP2/ERF domain
PRINTSPR003674.7E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MVPLRKYRGV RQRQWGSWVS EIRHPLLKRR VWLGTFQTAE EAARAYDQAA ILMNGRNAKT  60
NFPAAEGQQQ SGVNMPRLLS PAALSEKLRK CCKDTCPSLT CLRLDADSSH IGVWQKRAGE  120
RNGSNWVMRI ELGSANKTHN KEQKDSSISD KNKTDFDDDE VSVSVSDNIG LSENDENSKN  180
GGAEDAGDDD DEEDKIALQM IEELVNWNCP TPFVN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-16563160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00527DAPTransfer from AT5G25390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466410.11e-77PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_008466409.11e-77PREDICTED: ethylene-responsive transcription factor SHINE 2-like
RefseqXP_008466408.11e-77PREDICTED: ethylene-responsive transcription factor SHINE 2-like
SwissprotQ3E9582e-67SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBLA0A0A0LJA85e-75A0A0A0LJA8_CUCSA; Uncharacterized protein
STRINGVIT_04s0008g05440.t014e-69(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11190.11e-59ERF family protein